Publications

You can find my full list of articles on my Google Scholar profile.

Selected Publications

^= co-first author

STORIES: learning cell fate landscapes from spatial transcriptomics, G-J.Huizing^, J.Samaran^, A.Audit, D.Capocefalo, G.Peyré, L.Cantini, 2025, Accepted in Nature Methods
scPRINT: pre-training on 50 million cells allows robust gene network predictions, J.Kalfon, J.Samaran, G.Peyré, L.Cantini, 2025, Nature Communications
scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features, J.Samaran, G.Peyré, L.Cantini, 2024, Nature Communications